HL_8VTW_206

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8VTW|1|1A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTW_206 not in the Motif Atlas

Homologous match to HL_9DFE_027

Geometric discrepancy: 0.5052

The information below is about HL_9DFE_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTW|1|1A|C|1064
8VTW|1|1A|U|1065
8VTW|1|1A|U|1066
8VTW|1|1A|A|1067
8VTW|1|1A|G|1068
8VTW|1|1A|A|1069
8VTW|1|1A|A|1070
8VTW|1|1A|G|1071
8VTW|1|1A|C|1072
8VTW|1|1A|A|1073
8VTW|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16