HL_8VTX_124

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

8VTX|1|2A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTX_124 not in the Motif Atlas

Homologous match to HL_8VTW_012

Geometric discrepancy: 0.0448

The information below is about HL_8VTW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.6

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VTX|1|2A|G|382
8VTX|1|2A|U|383
8VTX|1|2A|U|384
8VTX|1|2A|C|385
8VTX|1|2A|G|386
8VTX|1|2A|U|387
8VTX|1|2A|G|388
8VTX|1|2A|G|389
8VTX|1|2A|A|390
8VTX|1|2A|G|391
8VTX|1|2A|C|392

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15