HL_8VTX_137

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCCCACCAGCC

Length

11 nucleotides

Bulged bases

8VTX|1|2A|C|888

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTX|1|2A|G|883
8VTX|1|2A|C|884
8VTX|1|2A|C|885
8VTX|1|2A|C|886
8VTX|1|2A|A|887
8VTX|1|2A|C|888
8VTX|1|2A|C|889
8VTX|1|2A|A|890
8VTX|1|2A|G|892
8VTX|1|2A|C|893
8VTX|1|2A|C|894

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2w

Transfer RNA; tRNA