HL_8VTY_009

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

8VTY|1|1A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTY_009 not in the Motif Atlas

Homologous match to HL_8VTW_009

Geometric discrepancy: 0.0234

The information below is about HL_8VTW_009

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8VTY|1|1A|U|305
8VTY|1|1A|U|306
8VTY|1|1A|G|307
8VTY|1|1A|G|308
8VTY|1|1A|G|309
8VTY|1|1A|A|310
8VTY|1|1A|A|311
8VTY|1|1A|G|312

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Y

50S ribosomal protein L24