HL_8VTY_128

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

8VTY|1|2A|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTY_128 not in the Motif Atlas

Homologous match to HL_8VTW_025

Geometric discrepancy: 0.4129

The information below is about HL_8VTW_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_29735.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VTY|1|2A|C|884
8VTY|1|2A|C|885
8VTY|1|2A|C|886
8VTY|1|2A|A|887
8VTY|1|2A|C|888
8VTY|1|2A|C|889
8VTY|1|2A|A|890
8VTY|1|2A|G|892

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13