HL_8VTY_137

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8VTY|1|2A|U|1396, 8VTY|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTY_137 not in the Motif Atlas

Homologous match to HL_8VTW_035

Geometric discrepancy: 0.0549

The information below is about HL_8VTW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VTY|1|2A|G|1389
8VTY|1|2A|U|1390
8VTY|1|2A|U|1391
8VTY|1|2A|A|1392
8VTY|1|2A|A|1393
8VTY|1|2A|U|1394
8VTY|1|2A|A|1395
8VTY|1|2A|U|1396
8VTY|1|2A|U|1397
8VTY|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23