HL_8VTY_181

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTY_181 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0766

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VTY|1|2a|C|320
8VTY|1|2a|A|321
8VTY|1|2a|C|322
8VTY|1|2a|U|323
8VTY|1|2a|G|324
8VTY|1|2a|A|325
8VTY|1|2a|G|326
8VTY|1|2a|A|327
8VTY|1|2a|C|328
8VTY|1|2a|A|329
8VTY|1|2a|C|330
8VTY|1|2a|G|331
8VTY|1|2a|G|332
8VTY|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20