HL_8VUP_006

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8VUP|1|1|A|196, 8VUP|1|1|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_006 not in the Motif Atlas

Geometric match to HL_8CRE_001

Geometric discrepancy: 0.1542

The information below is about HL_8CRE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VUP|1|1|G|194
8VUP|1|1|A|195
8VUP|1|1|A|196
8VUP|1|1|A|197
8VUP|1|1|C|198
8VUP|1|1|A|199
8VUP|1|1|U|200
8VUP|1|1|C|201

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28