HL_8VUP_033

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_033 not in the Motif Atlas

Geometric match to HL_9DFE_033

Geometric discrepancy: 0.1708

The information below is about HL_9DFE_033

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8VUP|1|1|C|1363
8VUP|1|1|G|1364
8VUP|1|1|A|1365
8VUP|1|1|A|1366
8VUP|1|1|A|1367
8VUP|1|1|G|1368

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28

Chain d

50S ribosomal protein L34