HL_8VUP_034

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8VUP|1|1|U|1391, 8VUP|1|1|U|1396, 8VUP|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_034 not in the Motif Atlas

Geometric match to HL_5J7L_168

Geometric discrepancy: 0.2763

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VUP|1|1|G|1389
8VUP|1|1|U|1390
8VUP|1|1|U|1391
8VUP|1|1|A|1392
8VUP|1|1|A|1393
8VUP|1|1|U|1394
8VUP|1|1|A|1395
8VUP|1|1|U|1396
8VUP|1|1|U|1397
8VUP|1|1|C|1398

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23