HL_8VUP_039

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8VUP|1|1|A|1614, 8VUP|1|1|A|1616, 8VUP|1|1|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_039 not in the Motif Atlas

Geometric match to HL_5J7L_173

Geometric discrepancy: 0.1527

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VUP|1|1|C|1612
8VUP|1|1|G|1613
8VUP|1|1|A|1614
8VUP|1|1|C|1615
8VUP|1|1|A|1616
8VUP|1|1|C|1617
8VUP|1|1|A|1618
8VUP|1|1|G|1619

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34