HL_8VUP_063

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_063 not in the Motif Atlas

Geometric match to HL_4Y1M_004

Geometric discrepancy: 0.1783

The information below is about HL_4Y1M_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8VUP|1|1|C|2658
8VUP|1|1|G|2659
8VUP|1|1|A|2660
8VUP|1|1|G|2661
8VUP|1|1|A|2662
8VUP|1|1|G|2663

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL6