3D structure

PDB id
8VUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUUUAAG
Length
7 nucleotides
Bulged bases
8VUP|1|1|U|2796, 8VUP|1|1|U|2797, 8VUP|1|1|U|2798, 8VUP|1|1|A|2800
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VUP_066 not in the Motif Atlas
Geometric match to HL_8CRE_038
Geometric discrepancy: 0.3281
The information below is about HL_8CRE_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

8VUP|1|1|C|2795
8VUP|1|1|U|2796
8VUP|1|1|U|2797
8VUP|1|1|U|2798
8VUP|1|1|A|2799
8VUP|1|1|A|2800
8VUP|1|1|G|2801

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0656 s