HL_8VUP_071

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_071 not in the Motif Atlas

Geometric match to HL_6UFH_005

Geometric discrepancy: 0.1674

The information below is about HL_6UFH_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8VUP|1|2|G|158
8VUP|1|2|G|159
8VUP|1|2|A|160
8VUP|1|2|A|161
8VUP|1|2|A|162
8VUP|1|2|C|163

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19

Chain y

30S ribosomal protein S20