HL_8VUP_075
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VUP_075 not in the Motif Atlas
- Geometric match to HL_7UQ6_002
- Geometric discrepancy: 0.2183
- The information below is about HL_7UQ6_002
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
8VUP|1|2|U|296
8VUP|1|2|G|297
8VUP|1|2|A|298
8VUP|1|2|G|299
8VUP|1|2|A|300
8VUP|1|2|G|301
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S4
- Chain j
- 30S ribosomal protein S5
- Chain q
- Small ribosomal subunit protein uS12
- Chain v
- 30S ribosomal protein S17
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