HL_8VUP_080

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_080 not in the Motif Atlas

Homologous match to HL_8B0X_011

Geometric discrepancy: 0.3375

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VUP|1|2|G|462
8VUP|1|2|U|463
8VUP|1|2|U|464
8VUP|1|2|A|465
8VUP|1|2|A|466
8VUP|1|2|U|467
8VUP|1|2|A|468
8VUP|1|2|C|469
8VUP|1|2|C|470

Current chains

Chain 2

16S ribosomal RNA

Nearby chains