HL_8VUP_087

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_087 not in the Motif Atlas

Geometric match to HL_4LFB_019

Geometric discrepancy: 0.1652

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VUP|1|2|C|862
8VUP|1|2|U|863
8VUP|1|2|A|864
8VUP|1|2|A|865
8VUP|1|2|C|866
8VUP|1|2|G|867

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S5