HL_8VUP_090

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_090 not in the Motif Atlas

Geometric match to HL_5FQ5_003

Geometric discrepancy: 0.2777

The information below is about HL_5FQ5_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8VUP|1|2|A|1012
8VUP|1|2|G|1013
8VUP|1|2|A|1014
8VUP|1|2|G|1015
8VUP|1|2|A|1016
8VUP|1|2|U|1017

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

Small ribosomal subunit protein uS14

Chain x

30S ribosomal protein S19