HL_8VV4_072

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VV4_072 not in the Motif Atlas

Geometric match to HL_6WPI_001

Geometric discrepancy: 0.1811

The information below is about HL_6WPI_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8VV4|1|2|U|296
8VV4|1|2|G|297
8VV4|1|2|A|298
8VV4|1|2|G|299
8VV4|1|2|A|300
8VV4|1|2|G|301

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain j

30S ribosomal protein S5

Chain v

Small ribosomal subunit protein uS17