HL_8VV4_081

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VV4_081 not in the Motif Atlas

Geometric match to HL_8P9A_210

Geometric discrepancy: 0.1773

The information below is about HL_8P9A_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8VV4|1|2|C|726
8VV4|1|2|G|727
8VV4|1|2|A|728
8VV4|1|2|A|729
8VV4|1|2|G|730
8VV4|1|2|G|731

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain t

Small ribosomal subunit protein uS15

Chain w

30S ribosomal protein S18

Chain z

30S ribosomal protein S21