HL_8VV4_090

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8VV4|1|2|C|1136, 8VV4|1|2|C|1137

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VV4_090 not in the Motif Atlas

Geometric match to HL_7A0S_042

Geometric discrepancy: 0.3394

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8VV4|1|2|G|1134
8VV4|1|2|U|1135
8VV4|1|2|C|1136
8VV4|1|2|C|1137
8VV4|1|2|G|1138
8VV4|1|2|G|1139
8VV4|1|2|C|1140

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS9