HL_8VVP_001

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAGCGGCAAA

Length

10 nucleotides

Bulged bases

8VVP|1|SA|C|16, 8VVP|1|SA|G|17, 8VVP|1|SA|G|18, 8VVP|1|SA|C|19, 8VVP|1|SA|A|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_001 not in the Motif Atlas

Geometric match to HL_2AZX_004

Geometric discrepancy: 0.1225

The information below is about HL_2AZX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8VVP|1|SA|U|13
8VVP|1|SA|A|14
8VVP|1|SA|G|15
8VVP|1|SA|C|16
8VVP|1|SA|G|17
8VVP|1|SA|G|18
8VVP|1|SA|C|19
8VVP|1|SA|A|20
8VVP|1|SA|A|21
8VVP|1|SA|A|22

Current chains

Chain SA

P-site tRNA

Nearby chains

Chain J

uL5

Chain NA

eL42

Chain WA

Large subunit ribosomal RNA; LSU rRNA