HL_8VVP_005
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUUUUAAU
- Length
- 9 nucleotides
- Bulged bases
- 8VVP|1|TA|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_005 not in the Motif Atlas
- Geometric match to HL_8CRE_027
- Geometric discrepancy: 0.392
- The information below is about HL_8CRE_027
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
8VVP|1|TA|A|31
8VVP|1|TA|C|32
8VVP|1|TA|U|33
8VVP|1|TA|U|34
8VVP|1|TA|U|35
8VVP|1|TA|U|36
8VVP|1|TA|A|37
8VVP|1|TA|A|38
8VVP|1|TA|U|39
Current chains
- Chain TA
- E-site tRNA
Nearby chains
- Chain CC
- S28
- Chain FB
- S5
- Chain OB
- S14
- Chain SA
- Transfer RNA; tRNA
- Chain VA
- mRNA
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
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