HL_8VVP_008

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCUCCCACGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|UA|G|30
8VVP|1|UA|C|31
8VVP|1|UA|C|32
8VVP|1|UA|U|33
8VVP|1|UA|C|34
8VVP|1|UA|C|35
8VVP|1|UA|C|36
8VVP|1|UA|A|37
8VVP|1|UA|C|38
8VVP|1|UA|G|39
8VVP|1|UA|C|40

Current chains

Chain UA

A-site tRNA

Nearby chains

Chain PB

S15

Chain VA

mRNA

Chain WA

Large subunit ribosomal RNA; LSU rRNA

Chain XB

S23

Chain ZA

Small subunit ribosomal RNA; SSU rRNA