HL_8VVP_009

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_009 not in the Motif Atlas

Geometric match to HL_3AM1_004

Geometric discrepancy: 0.2711

The information below is about HL_3AM1_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8VVP|1|UA|G|53
8VVP|1|UA|U|54
8VVP|1|UA|U|55
8VVP|1|UA|C|56
8VVP|1|UA|G|57
8VVP|1|UA|A|58
8VVP|1|UA|A|59
8VVP|1|UA|A|60
8VVP|1|UA|C|61

Current chains

Chain UA

A-site tRNA

Nearby chains

Chain HC

eukaryotic elongation factor 1A

Chain RA

L12

Chain WA

Large subunit ribosomal RNA; LSU rRNA