HL_8VVP_010
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 8VVP|1|WA|A|39, 8VVP|1|WA|A|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_010 not in the Motif Atlas
- Geometric match to HL_8CRE_001
- Geometric discrepancy: 0.0856
- The information below is about HL_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
8VVP|1|WA|U|37
8VVP|1|WA|A|38
8VVP|1|WA|A|39
8VVP|1|WA|G|40
8VVP|1|WA|C|41
8VVP|1|WA|A|42
8VVP|1|WA|U|43
8VVP|1|WA|A|44
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain K
- L13
- Chain M
- L15
- Chain NA
- eL42
- Chain Z
- L27a
Coloring options: