HL_8VVP_016

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8VVP|1|WA|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|G|230
8VVP|1|WA|U|231
8VVP|1|WA|G|232
8VVP|1|WA|U|233
8VVP|1|WA|G|234
8VVP|1|WA|A|235
8VVP|1|WA|G|236
8VVP|1|WA|G|237
8VVP|1|WA|C|238

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26

Chain YA

5.8S ribosomal RNA; 5.8S rRNA