HL_8VVP_024

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8VVP|1|WA|C|1327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_024 not in the Motif Atlas

Geometric match to HL_8CRE_013

Geometric discrepancy: 0.0704

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VVP|1|WA|U|1319
8VVP|1|WA|C|1320
8VVP|1|WA|U|1321
8VVP|1|WA|U|1322
8VVP|1|WA|G|1323
8VVP|1|WA|A|1324
8VVP|1|WA|A|1325
8VVP|1|WA|A|1326
8VVP|1|WA|C|1327
8VVP|1|WA|A|1328

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL2

Chain DA

L32

Chain Z

L27a