HL_8VVP_028

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

8VVP|1|WA|C|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_028 not in the Motif Atlas

Homologous match to HL_9PN5_018

Geometric discrepancy: 0.5402

The information below is about HL_9PN5_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8VVP|1|WA|G|1481
8VVP|1|WA|C|1482
8VVP|1|WA|C|1483
8VVP|1|WA|G|1484
8VVP|1|WA|C|1485
8VVP|1|WA|G|1486
8VVP|1|WA|C|1487
8VVP|1|WA|C|1488

Current chains

Chain WA

28S rRNA

Nearby chains

Chain HA

L36

Chain K

L13