HL_8VVP_034

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

8VVP|1|WA|G|1823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_034 not in the Motif Atlas

Geometric match to HL_8P9A_136

Geometric discrepancy: 0.3795

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8VVP|1|WA|C|1818
8VVP|1|WA|U|1819
8VVP|1|WA|G|1820
8VVP|1|WA|G|1821
8VVP|1|WA|U|1822
8VVP|1|WA|G|1823
8VVP|1|WA|U|1824
8VVP|1|WA|G|1825

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain D

uL18

Chain S

eL21