HL_8VVP_037

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8VVP|1|WA|A|1986

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_037 not in the Motif Atlas

Geometric match to HL_5J7L_161

Geometric discrepancy: 0.2375

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVP|1|WA|C|1980
8VVP|1|WA|A|1981
8VVP|1|WA|U|1982
8VVP|1|WA|G|1983
8VVP|1|WA|G|1984
8VVP|1|WA|A|1985
8VVP|1|WA|A|1986
8VVP|1|WA|G|1987
8VVP|1|WA|U|1988
8VVP|1|WA|C|1989
8VVP|1|WA|G|1990

Current chains

Chain WA

28S rRNA

Nearby chains

Chain RA

L12

Chain UA

Transfer RNA; tRNA