HL_8VVP_041

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_041 not in the Motif Atlas

Geometric match to HL_8CRE_030

Geometric discrepancy: 0.143

The information below is about HL_8CRE_030

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VVP|1|WA|A|2378
8VVP|1|WA|C|2379
8VVP|1|WA|G|2380
8VVP|1|WA|A|2381
8VVP|1|WA|G|2382
8VVP|1|WA|A|2383
8VVP|1|WA|A|2384
8VVP|1|WA|C|2385
8VVP|1|WA|U|2386

Current chains

Chain WA

28S rRNA

Nearby chains

Chain CA

L31

Chain O

uL22

Chain Q

eL19