HL_8VVP_042

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8VVP|1|WA|G|2423, 8VVP|1|WA|U|2427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_042 not in the Motif Atlas

Geometric match to HL_9DFE_036

Geometric discrepancy: 0.1532

The information below is about HL_9DFE_036

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8VVP|1|WA|A|2422
8VVP|1|WA|G|2423
8VVP|1|WA|C|2424
8VVP|1|WA|A|2425
8VVP|1|WA|G|2426
8VVP|1|WA|U|2427
8VVP|1|WA|U|2428

Current chains

Chain WA

28S rRNA

Nearby chains

Chain KA

eL39

Chain O

uL22

Chain Q

eL19