HL_8VVP_058

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8VVP|1|WA|C|3675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_058 not in the Motif Atlas

Geometric match to HL_8P9A_125

Geometric discrepancy: 0.2555

The information below is about HL_8P9A_125

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVP|1|WA|C|3670
8VVP|1|WA|G|3671
8VVP|1|WA|C|3672
8VVP|1|WA|G|3673
8VVP|1|WA|G|3674
8VVP|1|WA|C|3675
8VVP|1|WA|G|3676

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL3

Chain G

L7A

Chain M

L15