HL_8VVP_062

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8VVP|1|WA|A|3878, 8VVP|1|WA|A|3879, 8VVP|1|WA|C|3880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_062 not in the Motif Atlas

Geometric match to HL_8CRE_049

Geometric discrepancy: 0.0516

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVP|1|WA|G|3875
8VVP|1|WA|G|3876
8VVP|1|WA|G|3877
8VVP|1|WA|A|3878
8VVP|1|WA|A|3879
8VVP|1|WA|C|3880
8VVP|1|WA|G|3881
8VVP|1|WA|G|3882
8VVP|1|WA|G|3883
8VVP|1|WA|C|3884

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL2

Chain DA

L32