HL_8VVP_063

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGACAUGACAUCGUUU

Length

16 nucleotides

Bulged bases

8VVP|1|WA|C|3950, 8VVP|1|WA|A|3954, 8VVP|1|WA|C|4063

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|WA|A|3947
8VVP|1|WA|G|3948
8VVP|1|WA|A|3949
8VVP|1|WA|C|3950
8VVP|1|WA|A|3951
8VVP|1|WA|U|3952
8VVP|1|WA|G|3953
8VVP|1|WA|A|3954
8VVP|1|WA|C|4063
8VVP|1|WA|A|4064
8VVP|1|WA|U|4065
8VVP|1|WA|C|4066
8VVP|1|WA|G|4067
8VVP|1|WA|U|4068
8VVP|1|WA|U|4069
8VVP|1|WA|U|4070

Current chains

Chain WA

28S rRNA

Nearby chains

Chain BB

S3A

Chain HA

L36