HL_8VVP_066

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8VVP|1|WA|G|4197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_066 not in the Motif Atlas

Geometric match to HL_8P9A_165

Geometric discrepancy: 0.1036

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8VVP|1|WA|C|4195
8VVP|1|WA|U|4196
8VVP|1|WA|G|4197
8VVP|1|WA|G|4198
8VVP|1|WA|G|4199
8VVP|1|WA|G|4200
8VVP|1|WA|C|4201
8VVP|1|WA|G|4202
8VVP|1|WA|G|4203

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain I

L10

Chain SA

Transfer RNA; tRNA