HL_8VVP_068

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_068 not in the Motif Atlas

Geometric match to HL_4V9F_057

Geometric discrepancy: 0.19

The information below is about HL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8VVP|1|WA|G|4252
8VVP|1|WA|A|4253
8VVP|1|WA|C|4254
8VVP|1|WA|A|4255
8VVP|1|WA|G|4256
8VVP|1|WA|A|4257
8VVP|1|WA|A|4258
8VVP|1|WA|A|4259
8VVP|1|WA|C|4260

Current chains

Chain WA

28S rRNA

Nearby chains

Chain J

uL5