HL_8VVP_069

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_069 not in the Motif Atlas

Geometric match to HL_8CRE_056

Geometric discrepancy: 0.0985

The information below is about HL_8CRE_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8VVP|1|WA|C|4272
8VVP|1|WA|A|4273
8VVP|1|WA|G|4274
8VVP|1|WA|A|4275
8VVP|1|WA|A|4276
8VVP|1|WA|G|4277
8VVP|1|WA|G|4278
8VVP|1|WA|G|4279

Current chains

Chain WA

28S rRNA

Nearby chains

Chain I

L10

Chain S

eL21

Chain SA

Transfer RNA; tRNA