HL_8VVP_077

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_077 not in the Motif Atlas

Geometric match to HL_9DXL_001

Geometric discrepancy: 0.0811

The information below is about HL_9DXL_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVP|1|WA|C|4605
8VVP|1|WA|G|4606
8VVP|1|WA|A|4607
8VVP|1|WA|G|4608
8VVP|1|WA|A|4609
8VVP|1|WA|G|4610

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain HC

eukaryotic elongation factor 1A

Chain LA

eL40

Chain UA

Transfer RNA; tRNA