HL_8VVP_078

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAGGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_078 not in the Motif Atlas

Geometric match to HL_5J7L_198

Geometric discrepancy: 0.134

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8VVP|1|WA|U|4648
8VVP|1|WA|G|4649
8VVP|1|WA|A|4650
8VVP|1|WA|G|4651
8VVP|1|WA|G|4652
8VVP|1|WA|A|4653

Current chains

Chain WA

28S rRNA

Nearby chains

Chain CA

L31

Chain Q

eL19

Chain T

eL22