HL_8VVP_079

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8VVP|1|WA|G|4696, 8VVP|1|WA|C|4700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_079 not in the Motif Atlas

Geometric match to HL_8CRE_066

Geometric discrepancy: 0.0792

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VVP|1|WA|C|4690
8VVP|1|WA|U|4691
8VVP|1|WA|G|4692
8VVP|1|WA|A|4693
8VVP|1|WA|A|4694
8VVP|1|WA|C|4695
8VVP|1|WA|G|4696
8VVP|1|WA|C|4697
8VVP|1|WA|C|4698
8VVP|1|WA|U|4699
8VVP|1|WA|C|4700
8VVP|1|WA|U|4701
8VVP|1|WA|A|4702
8VVP|1|WA|A|4703
8VVP|1|WA|G|4704

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40

Chain N

uL13