HL_8VVP_082

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8VVP|1|WA|U|4978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_082 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1174

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVP|1|WA|G|4977
8VVP|1|WA|U|4978
8VVP|1|WA|A|4979
8VVP|1|WA|G|4980
8VVP|1|WA|A|4981
8VVP|1|WA|C|4982
8VVP|1|WA|G|4983
8VVP|1|WA|A|4984
8VVP|1|WA|C|4985

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL2

Chain O

uL22