HL_8VVP_086

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_086 not in the Motif Atlas

Geometric match to HL_7U4A_003

Geometric discrepancy: 0.0625

The information below is about HL_7U4A_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVP|1|XA|G|86
8VVP|1|XA|G|87
8VVP|1|XA|A|88
8VVP|1|XA|G|89
8VVP|1|XA|A|90
8VVP|1|XA|C|91

Current chains

Chain XA

5S rRNA

Nearby chains

Chain I

L10

Chain R

L18a

Chain WA

Large subunit ribosomal RNA; LSU rRNA