HL_8VVP_087
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_087 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.1718
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8VVP|1|YA|C|47
8VVP|1|YA|A|48
8VVP|1|YA|G|49
8VVP|1|YA|C|50
8VVP|1|YA|U|51
8VVP|1|YA|A|52
8VVP|1|YA|G|53
8VVP|1|YA|C|54
8VVP|1|YA|U|55
8VVP|1|YA|G|56
Current chains
- Chain YA
- 5.8S rRNA
Nearby chains
- Chain GA
- L35
- Chain IA
- L37
- Chain KA
- eL39
- Chain W
- uL23
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: