HL_8VVP_089

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

8VVP|1|YA|U|110, 8VVP|1|YA|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_089 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.1553

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8VVP|1|YA|C|107
8VVP|1|YA|A|108
8VVP|1|YA|C|109
8VVP|1|YA|U|110
8VVP|1|YA|U|111
8VVP|1|YA|G|112

Current chains

Chain YA

5.8S rRNA

Nearby chains

Chain IA

L37

Chain KA

eL39

Chain W

uL23

Chain WA

Large subunit ribosomal RNA; LSU rRNA