HL_8VVP_099
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8VVP|1|ZA|C|450, 8VVP|1|ZA|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_099 not in the Motif Atlas
- Geometric match to HL_8CRE_200
- Geometric discrepancy: 0.0802
- The information below is about HL_8CRE_200
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|ZA|C|441
8VVP|1|ZA|C|442
8VVP|1|ZA|U|443
8VVP|1|ZA|G|444
8VVP|1|ZA|A|445
8VVP|1|ZA|G|446
8VVP|1|ZA|A|447
8VVP|1|ZA|A|448
8VVP|1|ZA|A|449
8VVP|1|ZA|C|450
8VVP|1|ZA|G|451
8VVP|1|ZA|G|452
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain EB
- S4
- Chain GB
- eS6
- Chain IB
- S8
- Chain YB
- S24
Coloring options: