HL_8VVP_106

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

8VVP|1|ZA|U|890, 8VVP|1|ZA|G|891, 8VVP|1|ZA|U|892, 8VVP|1|ZA|U|893, 8VVP|1|ZA|U|896, 8VVP|1|ZA|U|897

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|ZA|C|884
8VVP|1|ZA|U|885
8VVP|1|ZA|A|886
8VVP|1|ZA|U|887
8VVP|1|ZA|U|888
8VVP|1|ZA|U|889
8VVP|1|ZA|U|890
8VVP|1|ZA|G|891
8VVP|1|ZA|U|892
8VVP|1|ZA|U|893
8VVP|1|ZA|G|894
8VVP|1|ZA|G|895
8VVP|1|ZA|U|896
8VVP|1|ZA|U|897
8VVP|1|ZA|U|898
8VVP|1|ZA|U|899
8VVP|1|ZA|C|900
8VVP|1|ZA|G|901
8VVP|1|ZA|G|902

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain LB

S11