HL_8VVP_107

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_107 not in the Motif Atlas

Geometric match to HL_8P9A_209

Geometric discrepancy: 0.1478

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8VVP|1|ZA|A|957
8VVP|1|ZA|G|958
8VVP|1|ZA|G|959
8VVP|1|ZA|U|960
8VVP|1|ZA|G|961
8VVP|1|ZA|A|962
8VVP|1|ZA|A|963
8VVP|1|ZA|A|964
8VVP|1|ZA|U|965
8VVP|1|ZA|U|966

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain FB

S5

Chain OB

S14

Chain TA

Transfer RNA; tRNA

Chain VA

mRNA