HL_8VVP_113
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8VVP|1|ZA|A|1253
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_113 not in the Motif Atlas
- Geometric match to HL_8CRE_216
- Geometric discrepancy: 0.0977
- The information below is about HL_8CRE_216
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|ZA|G|1245
8VVP|1|ZA|A|1246
8VVP|1|ZA|C|1247
8VVP|1|ZA|U|1248
8VVP|1|ZA|C|1249
8VVP|1|ZA|A|1250
8VVP|1|ZA|A|1251
8VVP|1|ZA|C|1252
8VVP|1|ZA|A|1253
8VVP|1|ZA|C|1254
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain DC
- uS14
- Chain PB
- S15
- Chain QB
- uS9
- Chain SA
- Transfer RNA; tRNA
- Chain UA
- Transfer RNA; tRNA
- Chain UB
- uS10
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